Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs3758745 chr11:33059513 C/T 1.09E-6 293 21.97 24.77 1.7 KM Plot
CESC rs3767590 chr1:112299911 A/G 0 298 21.33 20.47 4.07 KM Plot
CESC rs3774780 chr3:129224106 T/G 4.83E-5 295 21.73 20.63 14.73 KM Plot
CESC rs3783838 chr14:90733012 A/G 5.44E-5 299 20.23 21.3 24.62 KM Plot
CESC rs3785100 chr16:67997920 T/C 2.37E-5 288 20.63 29.57 16.4 KM Plot
CESC rs379909 chr19:11383810 A/G 2.72E-5 290 24.47 21.1 21.2 KM Plot
CESC rs3809630 chr16:67879400 G/A 2.75E-6 294 20.92 28.47 17.43 KM Plot
CESC rs3812062 chr5:126112283 C/A 0 291 21.2 20.77 1.73 KM Plot
CESC rs3814964 chr11:2999507 G/T 2.81E-5 294 21.2 24.3 21.43 KM Plot
CESC rs3863952 chr7:123171842 A/G 6.3E-13 292 23.42 18.07 3.97 KM Plot
CESC rs390313 chr19:11392004 T/C 5.37E-5 293 20.23 21.27 21.2 KM Plot
CESC rs3933766 chr13:20110195 C/T 3.98E-5 299 14.9 26.35 21.12 KM Plot
CESC rs401511 chr19:11386386 A/G 2.21E-5 292 20.23 22.28 21.2 KM Plot
CESC rs4030739 chr10:88227575 T/A 1.6E-14 297 3.33 24.6 21.17 KM Plot
CESC rs412298 chr19:11391347 A/G 3.87E-5 293 23.33 23.3 21.2 KM Plot